enrichplot
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YuLab-SMU
Visualization of Functional Enrichment Result
Hi, Does not matter what I do, the legend saying "gene number" and "log2FC" overlaps all the time with the actual plot I tried different parameters of the cnetplot function...
UPDATE: This is what I am more or less trying to achieve. This is part of the output you get when you run the GSEA software. Hello everyone, I am...
This is for https://github.com/YuLab-SMU/clusterProfiler/issues/482 When fortify compareClusterResult that frome `enrichGO()` and `ontology = "all"`, the cluster of data is wrong assigned. And this should be a bug.  I, therefore,...
Hi, I am making plot using cnetplot. The problem is there is too many labels (genes). Is it possible to only label the gene nodes with top 20 fold change?...
Hello, I am using the latest version of enrichplot and clusterProfiler from github. For some reason the cnetplot and heatmap function dont show the Foldchange even if i provide it...
Hi, is it possible to change the node color in emapplot? Also the cnetplot has default color red and green for the edges, can I change those to different colors,...
Hi, hope this is the right place to post this. My apologies if not. I'm trying to use dotplot with the results of compareCluster from clusterProfiler. As you can see...
again, upsetplot has a similar error! _Originally posted by @kaji331 in https://github.com/YuLab-SMU/enrichplot/issues/174#issuecomment-1140949633_
Hi, Just wanted to point out that upsetplot.gseaResult plots outliers twice when type = "boxplot", as both the geom_jitter and geom_boxplot layer plots these. This would easily be fixed by...
在gseaplot2函数中当设置pvalue_table = T时，默认显示的是`pvalue`和`p.adjust`，但一般情况下需要的是NES和p值，能否适当予以调整，改成显示为`NES`和`p.adjust`（个人觉得没必要显示两个p值）。 我在查看gseaplot2函数时发现定义是： ``` if (pvalue_table) { pd
