James Ferguson
James Ferguson
hey @mshamash, I've got a fresh update on the dev branch which allows for most options to be parsed to guppy. So if you give it `--chunks_per_runner` it should know...
Hey, Is your pod5 file from multiple runs? The error is complaining about multiple rub_id/acquisition_id being present which usually indicates multiple runs being merged. This means you need multiple headers...
Hey, Yea so is the input just a flat file of read_ids Then they are the only reads you want converted? So kind of a get->convert in one step?
Do you mean like selecting 4 vs 5khz models? or do you want speed, motor protein and pore type as well? Which fields are the most reliable for this data?
This should be easy enough to add to the 0.6.1 release Checking the sample frequency when processing the reads.
This is not in dorado-server v7.6.8 I will have to wait for ONT to add it.
New dorado-server config file structure has changed since 7.3.9 onwards It now looks more like this `dna_r10.4.1_e8.2_400bps_modbases_5hmc_5mc_cg_hac.cfg` ``` # Basic configuration file for ONT basecaller software. # Basecalling. dorado_model_path =...
Looks like the way they expose the mode to the the API now includes the model version correctly, so no need to read the config file for an example in...
I can get modbase onese using this tag in the basecaller output `modbase_model_version_id`
Modbase model seems to only be exposed at the read level. I'm going to add this to the TODO pile because that will require getting the first read, and triggering...