James Ferguson

Ahh so these reads were built with squigulator? I'll need to tell @hasindu2008 to put a dummy end_reason in the blow5 output. In the meantime, I'll modify blue-crab to insert...

Hi Tomas, Could you please try using the dev branch and showing me the error it gives you? You can do this by activating your environment if you installed with...

Ahh progress! Okay so now the issue is the readID isn't a valid uuid. Again I think that's a squigulator issue. @hasindu2008 what are the readIDs you make? The issue...

Buttery-eel I can unbreak by using dummy uuids when i basecall and then replace the original readID when the read comes back. The issue is going over to pod5 you...

Hey, Okay I'll just make absolutely sure what pod5 is doing so we are 100% correct when we do this. James

Okay I have confirmed that pod5 requires a uuid type for the readID, even though it shouldn't have to be. ``` --s2p-- verbose=1 -------------------blue-crab version------------------- SLOW5/BLOW5 POD5 converter version: 0.1.0...

Buttery-eel should be fine, unless they change something in the dorado server code https://github.com/Psy-Fer/buttery-eel/issues/32 I use to think it was an issue, but turned out it was just a change...

I should probably merge the buttery-eel/skipped branch into main and do a release to handle this.

Hmm..make sure you have the latest pod5 version? Which version do you have? Please do a pip list for me?

Hey, I'm currently working my way through an update, so I can certainly make sure that `--chunks_per_runner` is one of the flags that can be accessed. Any other options you...