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subset of reads during conversion

Open hasindu2008 opened this issue 2 years ago • 2 comments

Hey @Psy-Fer,

This enhancement request [https://github.com/hasindu2008/slow5tools/issues/69] from @mbhall88 for slow5tools could not be honoured because of the amount of effort required to implement such a feature due to the complexity of the FAST5 handling code. Could you please evaluate how feasible this is in blue-crab when doing POD5->BLOW5 conversion?

hasindu2008 avatar Aug 12 '23 00:08 hasindu2008

Hey,

Yea so is the input just a flat file of read_ids

Then they are the only reads you want converted? So kind of a get->convert in one step?

Psy-Fer avatar Aug 12 '23 01:08 Psy-Fer

Correct 👍

mbhall88 avatar Aug 14 '23 03:08 mbhall88