Richard Harris
Richard Harris
Any thoughts on this issue from anyone?
@ddrazoh, You can get dorado pre-built for Mac from the [installation](https://github.com/nanoporetech/dorado?tab=readme-ov-file#installation) documentation. Do you have a specific reason for compiling? Kind regards, Rich
Hi @cfrias-cnag, is this running on a compute cluster?
No, I'm trying to understand why this issue is happening - You used `$INPUT` in your example and I was thinking that this could be related to other issues we've...
Could you add `-vv` to your command to generate a detailed log?
Also - can I confirm with you: This job was running for 2.5 days? ``` [2024-04-24 10:44:38.647] [info] > Processed read channel info [2024-04-26 23:01:43.012] [error] basic_string::substr: __pos (which is...
Hi @cfrias-cnag, sorry for the delayed response. Can you update dorado to 0.7.0 and try on a smaller dataset using `--max-reads 10000` to see if the issue persists?
https://github.com/nanoporetech/dorado/blob/release-v0.7/dorado/cli/basecaller.cpp#L473 https://github.com/nanoporetech/dorado/blob/release-v0.7/dorado/cli/demux.cpp#L106 `--max-reads` should be available in both simplex and duplex basecalling. Can you share your full command again?
This has been resolved in Dorado [0.7.0](https://github.com/nanoporetech/dorado/releases/tag/v0.7.0). Happy basecalling!
HI @xiangpingyu, - Is there any data in the output file `m6A.bam`? - Can you share what you see if you add verbose logging output with `-vv`? - Are you...