Richard Harris
Richard Harris
Hi @Macdot3, This could be an issue with the `vbz_h5py_plugin`. We're seeing the deprecation warning about .egg files at the top and the 3 duplicate lines is also an [issue](https://github.com/pypa/pip/issues/11937)...
I wrote a copy of it above to run as a script - that copy should be good to go if you write it to a file e.g. `test_h5py.py` and...
This is telling us that the HDF5 library can't load the vbz decode library in your Slurm cluster environment. I'm intrigued by this. Maybe it's my lack of experience with...
Hi @Macdot3, you don't need to edit `vbz_h5py_plugin/__init__.py.`. Just run the `test_h5py.py` script that I sent which should print the lib location. This should tell you where to set the...
@Macdot3. > The only problem is that I noticed that it gives me a different path every time. Are you running the script locally - i.e. __not__ on the slurm...
Ok, I suggest asking an administrator to install the vbx plugin. Let us know if that helps
Hi @JannesSP , We'll look into creating a conda package right away. In the meantime, are you able to install pod5 into a conda environment via `pip`? Kind regards, Rich
Ok, we'll get this sorted soon and we'll let you know when it's done. Kind regards, Rich
Hi @JannesSP , There's been no progress from us sorry. I've had some issues getting conda to build the package. We'll look into picking this back up to make some...
See: https://github.com/nanoporetech/pod5-file-format/issues/110