Richard Harris
Richard Harris
@EpiAllele does the reply from Marcus answer your questions and are there any more questions or can we close this issue? Kind regards, Rich
Hi @dbernick @j-jamshidi @chilampoon, We've been improving the stability of basecalling on Mac in recent releases. Are you still experiencing issues? Kind regards, Rich
Hi @microbemarsh, Does reducing the `--batchsize` improve things?
Hi @ymcki, > Does that mean if force them to run at the same batch size, then I can expect nearly identical basecalls? Setting the same batch size will **not**...
Hi Matt, Could you be more specific please - do you mean the output bam records have a missing `BC` tag entirely? Kind regards. Rich
Hi @sklages , we are in the process of updating `subset` to use significantly fewer resources. Thanks for raising this issue. We'll let you know when we push these changes...
hi @cocvincent, Can you add this environment variable before your command to generate log files please? Please also reduce the number of threads to 2 to generate fewer log files...
Hi @cocvincent - can you try and run `pod5` in a normal python virtual environment please? We've seen a few issues recently with users running in `conda`. ```bash # Create...
@cocvincent, do you have any updates on this issue?
Potentially. I suggest giving it a try. Can your cluster administrators update python? If your cluster doesn't have support for python3.8+ then many things will slowly stop working as 3.7...