Richard Harris
Richard Harris
I've tested locally and had the same issue. Fortunately, the solution is as easy as it is easy to miss! We require a comma separated list of modbase models. ```bash...
Closing this ticket as there has been changes to the models documentation and other issues have been resolved or moved to new issues.
Hi @ericmsmall, thanks for the detailed report. > When initializing Dorado with 2X GPUs... Just to clarify - Does the error occur before basecalling starts i.e. during auto batch size...
Those debug traces are showing that you might have other processes running on your GPUs. These can have a negative impact on the auto batch size calculation. Here we see...
Closing as there's been no reply.
Hi @gerald2545, Thanks for the detailed report. When you say the data is on GPFS or Local NVME - is that local to the slurm working node is some `/scratch`...
Hi @gerald2545, Apologies for not replying earlier - this completely fell off my radar. I'm pleased to hear that you found how to add multi-GPU support in slurm. I'm sure...
@galenptacek Please see this comment https://github.com/nanoporetech/dorado/issues/812#issuecomment-2114701066 discussing how nvidia doesn't support the use case of multiple MIGs. > Regardless of how many MIG devices are created (or made available to...
Closing as there's been no response - Please re-open if needed
@xieyy46, apologies for this thread being lost. 1. I'm not sure I understand your first question - the input (chunksize) and output (scores) tensor sizes scale together depending on the...