Richard Harris
Richard Harris
Hi @samuelmontgomery, the [email protected] models a use a new model architecture which we are still optimising. You can expect to see improvements in sup v5 basecalling speed in future dorado...
Hi @DKTMPELRN, What version of `cmake` do you have? Kind regards, Rich
@smaegol, I'll raise this internally and reply with a decision on this.
@nglaszik - are there any updates on this issue?
Does this issue persist in dorado-0.8.0? Kind regards, Rich
@pre-mRNA - Ok, I'll keep this issue open as the underlying problem isn't resolved. > For some reason, I also need to specifcy the model directory manually with the v0.8...
Hi @tnn111, could you add some more detail please - the template should be a good guide as to what information to add - e.g. commands run. Kind regards, Rich
This performance is inline with expectations as the 6mA model is all context and a significantly larger (more computationally intensive) model - this is why the performance is significantly impacted....
Hi @tijyojwad Splitting your command by whitspace shows you have 3 positional arguments here. I believe only 2 positional arguments are expected for `model` and `data` respectively. ```bash v313@v313-GP66-Leopard-11UH:~$ dorado...
Hi @jorisbalc , So to clairfy your command works without the `` but not with? ``` v313@v313-GP66-Leopard-11UH:~$ dorado basecaller /home/v313/Dorado/models/[email protected] /media/v313/T7\ Shield/2023_12_06_FAT_PL/bc14/ --modified-bases-models /home/v313/Dorado/models/[email protected]_5mCG_5hmCG@v1 --reference /home/v313/ref-seqs/gm119_ref.fasta > calls_mC_hmC_odyC.bam ```