jbrowse

jbrowse copied to clipboard

Hello, I am testing to replace jbrowse with mouse data, but the tbi of the mouse gff3 file is always wrong here. I don't know what is wrong. I would like to ask you about the index. Do you have any mouse data to provide? ? thanks

11

Hello, I am testing to replace jbrowse with mouse data, but the tbi of the mouse gff3 file is always wrong here. I don't know what is wrong. I would...

ouyang-lang

Updating Node Deps

1

This PR covers updates to the Node dependencies to mitigate ~100 vulnerabilities.

childers

Problem with combination track, not working

10

Hello, I am kind of newbie in this so apologies if i ask something easy. I am struggling to solve a problem similar to [351](https://github.com/gmod/jbrowse/issues/351) I have JBrowse 1.15.1 with...

armaos

Possible feature request

4

HI @cmdcolin We had a PomBase user ask for "summary statistics" for a region (e.g. number of genes, origins, GC content or whatever). Is this something that JBrowse might provide...

ValWood

tab focus for accessibility enhancement?

3

- JBrowse version: 1.16.11 and lower - Web browser being used: Chrome Hi Jbrowse team, We recently had an accessibility expert review the tools that we offer for our database,...

mpoelchau

is there a way to organize a large number of datasets?

2

Hi, I'd like to organize a large number of datasets (over 50 bacterial genomes) by category (e.g. family, genus, soil, waste, etc.) if possible, but I could not find the...

jvera888

adding annotation on a gff file results in uniqueID offset-1968619510"

9

I have a gff file that contains some info on the annotation of my genome. E.g: ``` ##gff-version 3 ##annot-version v2.1 ##species Amaranthus hypochondriacus Contig115|quiver| phytozomev12 gene 5405 8135 ....

Jungal10

Add a retry step to fetching features.

2

At my workplace we use jbrowse, but get UI errors when fetching features due to `status:0` -- it is not a CORS related thing and it occurs randomly and sometimes...

cmunk

Deals with ACLs

5

-d and -w test operators do not seem to respect the acls. use filetest pragma

FredericBGA

Ref #1548

cmdcolin