vcf-files topic

List vcf-files repositories

rvtests

126
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40
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Rare variant test software for next generation sequencing data

vcf2phylip

265
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83
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Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

SNPGenie

100
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37
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Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

learning_vcf_file

136
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40
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Learning the Variant Call Format

starfish

22
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2
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Intersect multiple VCF files with haplotype awareness

VCF-Simplify

45
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11
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A python parser to simplify and build the VCF (Variant Call Format).

vcfstats

57
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17
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Powerful statistics for VCF files

spark-vcf

15
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2
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Spark VCF data source implementation for Dataframes

MungeSumstats

66
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15
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Rapid standardisation and quality control of GWAS or QTL summary statistics