vcf-files topic
gcp-variant-transforms
GCP Variant Transforms
rvtests
Rare variant test software for next generation sequencing data
vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
SNPGenie
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
learning_vcf_file
Learning the Variant Call Format
starfish
Intersect multiple VCF files with haplotype awareness
VCF-Simplify
A python parser to simplify and build the VCF (Variant Call Format).
spark-vcf
Spark VCF data source implementation for Dataframes
MungeSumstats
Rapid standardisation and quality control of GWAS or QTL summary statistics