transcription-factors topic

Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.

Danko-Lab

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

MAGICS-LAB

Read HOMER motif analysis output in R.

slowkow

BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) http...

jaleesr

A motif discovery tool to detect the occurrences of known motifs

shao-lab

pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs

asntech

Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences

drewwiens