taxonomy topic
metacoder
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
ncbitax2lin
🐞 Convert NCBI taxonomy dump into lineages
crypto-ecosystems
A taxonomy for open source cryptocurrency, blockchain, and decentralized ecosystems
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
misp-taxonomies
Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.
kaiju
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
pyani
Application and Python module for average nucleotide identity analyses of microbes.
SonataClassificationBundle
Symfony SonataClassificationBundle