average-nucleotide-identity topic
pyani
Application and Python module for average nucleotide identity analyses of microbes.
skani
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
gsearch
Approximate nearest neighbour search for microbial genomes based on hash metric
pyskani
PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
pyfastani
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
skDER
skDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics.
BTyper3
In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
sylph
ultrafast genome querying and taxonomic profiling for metagenomic samples by abundance-corrected minhash.