metabarcoding topic
vsearch
Versatile open-source tool for microbiome analysis
metacoder
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
swarm
A robust and fast clustering method for amplicon-based studies
decontam
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
pr2database
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
BOLDigger
A python package to query different databases of boldsystems.org
barque
Environmental DNA metabarcoding taxonomic identification
CO1Classifier
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.