ncbi topic
ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
genomepy
genes and genomes at your fingertips
ncbitax2lin
🐞 Convert NCBI taxonomy dump into lineages
genome_updater
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
VAPiD
VAPiD: Viral Annotation and Identification Pipeline
multitax
Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
genome_collector
:stars: Easily download genomes and build BLAST/Bowtie indexes in Python
elastic-blast
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
taxadb
:hatching_chick: locally query the ncbi taxonomy