ncbi-taxonomy topic

List ncbi-taxonomy repositories

bio4j

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Bio4j abstract model and general entry point to the project

ncbitax2lin

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🐞 Convert NCBI taxonomy dump into lineages

lambda

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LAMBDA – the Local Aligner for Massive Biological DatA

taxid-changelog

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NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.

geneSynonym

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Quick access to gene synonyms

homologene

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:mouse: :left_right_arrow: :couple: An r package that works as a wrapper to homologene

taxadb

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:hatching_chick: locally query the ncbi taxonomy

taxdump_edit

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:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files

Assign-Taxonomy-with-BLAST

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Assign taxonomy with blast, can be used for qiime