ncbi-taxonomy topic
bio4j
Bio4j abstract model and general entry point to the project
ncbitax2lin
🐞 Convert NCBI taxonomy dump into lineages
lambda
LAMBDA – the Local Aligner for Massive Biological DatA
taxid-changelog
NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
geneSynonym
Quick access to gene synonyms
homologene
:mouse: :left_right_arrow: :couple: An r package that works as a wrapper to homologene
taxadb
:hatching_chick: locally query the ncbi taxonomy
taxdump_edit
:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files
Assign-Taxonomy-with-BLAST
Assign taxonomy with blast, can be used for qiime