spatial-omics topic

Spatial analysis toolkit for single cell multiplexed tissue data

Mr-Milk

ClusterMap for multi-scale clustering analysis of spatial gene expression

wanglab-broad

Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells

gustaveroussy

BANKSY: spatial clustering

prabhakarlab

conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics

ys-zong

Interactive visualization of spatial omics data

scverse

End-to-end analysis of spatial multi-omics data

Lotfollahi-lab

SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.

fanglu0411