somatic-variants topic
germline-DNA
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
SigProfilerPlotting
SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other...
SigProfilerSimulator
SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double poin...
sv-callers
Snakemake-based workflow for detecting structural variants in genomic data
deepsomatic
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
ClairS
ClairS - a deep-learning method for long-read somatic small variant calling
ClairS-TO
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
tif
Transposon Insertion Finder - Detection of new TE insertions in NGS data
dockstore-cgpwgs
Dockstore implementation of CGP core WGS analysis
SigProfilerExtractorR
An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures,...