gatk-bestpractices topic
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gatk-bestpractices repositories
germline-DNA
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A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
RNA-seq
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A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
human_genomics_pipeline
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A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Fastq-to-BAM
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Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi