sequencing topic

List sequencing repositories

sequenceserver

267
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114
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Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

isobar

357
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51
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A Python library for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC me...

RNAseq-workflow

387
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177
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A repository for setting up a RNAseq workflow

SnapATAC

294
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125
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Analysis Pipeline for Single Cell ATAC-seq

Roary

297
Stars
189
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Rapid large-scale prokaryote pan genome analysis

mixcr

312
Stars
78
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MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

hgvs

232
Stars
93
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Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

snp-sites

227
Stars
49
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Finds SNP sites from a multi-FASTA alignment file

Artemis

227
Stars
74
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Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation