Pathogen Informatics, Wellcome Sanger Institute
Results
19
repositories owned by
Pathogen Informatics, Wellcome Sanger Institute
Roary
297
Stars
189
Forks
Watchers
Rapid large-scale prokaryote pan genome analysis
snp-sites
227
Stars
49
Forks
Watchers
Finds SNP sites from a multi-FASTA alignment file
Artemis
227
Stars
74
Forks
Watchers
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
circlator
219
Stars
56
Forks
Watchers
A tool to circularize genome assemblies
ariba
155
Stars
52
Forks
Watchers
Antimicrobial Resistance Identification By Assembly
assembly-stats
108
Stars
22
Forks
Watchers
Get assembly statistics from FASTA and FASTQ files
Fastaq
68
Stars
19
Forks
Watchers
Python3 scripts to manipulate FASTA and FASTQ files
pathogen-informatics-training
64
Stars
36
Forks
Watchers
assembly_improvement
53
Stars
21
Forks
Watchers
Improve the quality of a denovo assembly by scaffolding and gap filling
Bio-Tradis
20
Stars
29
Forks
Watchers
A set of tools to analyse the output from TraDIS analyses