Pathogen Informatics, Wellcome Sanger Institute
Pathogen Informatics, Wellcome Sanger Institute
Roary
Rapid large-scale prokaryote pan genome analysis
snp-sites
Finds SNP sites from a multi-FASTA alignment file
Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
circlator
A tool to circularize genome assemblies
ariba
Antimicrobial Resistance Identification By Assembly
assembly-stats
Get assembly statistics from FASTA and FASTQ files
Fastaq
Python3 scripts to manipulate FASTA and FASTQ files
pathogen-informatics-training
assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
Bio-Tradis
A set of tools to analyse the output from TraDIS analyses