scrnaseq topic
kBET
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
scclusteval
Single Cell Cluster Evaluation
souporcell
Clustering scRNAseq by genotypes
Interactive-3D-Plotting-in-Seurat-3.0.0
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
scClustViz
Explore and share your scRNAseq clustering results
cellpypes
Cell type pipes for R
fishpond
Differential expression and allelic analysis, nonparametric statistics
scFates
a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
scMiko
R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.