scrnaseq topic
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scrnaseq repositories
kBET
147
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23
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An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
scclusteval
80
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13
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Single Cell Cluster Evaluation
souporcell
148
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42
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Clustering scRNAseq by genotypes
Interactive-3D-Plotting-in-Seurat-3.0.0
109
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27
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This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
scClustViz
45
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9
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Explore and share your scRNAseq clustering results
cellpypes
49
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3
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Cell type pipes for R
fishpond
24
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9
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Differential expression and allelic analysis, nonparametric statistics
scFates
44
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1
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a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
scMiko
22
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6
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R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.