batch-effects topic

List batch-effects repositories

kBET

147
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23
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An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.

ComBat-seq

149
Stars
39
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Batch effect adjustment based on negative binomial regression for RNA sequencing count data

mnnpy

71
Stars
31
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An implementation of MNN (Mutual Nearest Neighbors) correct in python.

radiator

59
Stars
23
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RADseq Data Exploration, Manipulation and Visualization using R

BEER

23
Stars
8
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BEER: Batch EffEct Remover for single-cell data

scBatch

17
Stars
9
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Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment