rna-seq topic
GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
fusioncatcher
Finder of Somatic Fusion Genes in RNA-seq data
TPMCalculator
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
kallisto
Near-optimal RNA-Seq quantification
single-cell-pseudotime
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
ARMOR
Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
velocyto.py
RNA velocity estimation in Python
rnaseqc
Fast, efficient RNA-Seq metrics for quality control and process optimization
rnafusion
RNA-seq analysis pipeline for detection of gene-fusions