recombination topic

compare sequences to a shared root reference sequence.

brwnj

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches

vinuesa

IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:

qmarcou

Inferring bacterial recombination rates from large-scale sequencing datasets.

kussell-lab

SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

solgenomics

Using correlated substitutions to infer recombination rates in RNA viruses

kussell-lab

Reproducible workflow for SARS-CoV-2 recombinant sequence detection.

ktmeaton

AMR/VF LGT focused bacterial genomics analysis workflow

beiko-lab

Recombination Landscape Estimation using Recurrent Neural Networks

kr-colab

discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

kr-colab