phasing topic

Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

PacificBiosciences

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

zengxiaofei

GWAS QC, PCA, haplotype phasing, genotype imputation

atgu

Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data

ptrebert