pathway topic

List pathway repositories

pathfindR

169
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25
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pathfindR: Enrichment Analysis Utilizing Active Subnetworks

pypath

128
Stars
42
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Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

KEGG-Crawler

19
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4
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A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.

pathway-benchmarks

32
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1
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Benchmarks for data processing systems: Pathway, Spark, Flink, Kafka Streams

llm-app

3.0k
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174
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LLM App templates for RAG, knowledge mining, and stream analytics. Ready to run with Docker,⚡in sync with your data sources.

ggkegg

199
Stars
16
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Analyzing and visualizing KEGG information using the grammar of graphics

pathway-examples

40
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4
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Code examples for the Pathway programming framework

pathway

2.3k
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87
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Python ETL framework for stream processing, real-time analytics, LLM pipelines, and RAG.

aPEAR

28
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10
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Enrichment Networks for Pathway Enrichment Analysis