pacbio topic
awesome-sequencing-tech-papers
A collection of publications on comparison of high-throughput sequencing technologies.
wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
gtz
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
shasta
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
Sniffles
Structural variation caller using third generation sequencing
Winnowmap
Long read / genome alignment software
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
NextDenovo
Fast and accurate de novo assembler for long reads