ngs-analysis topic
SalmonTE
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
SparK
Publication quality NGS track plotting
graphsim
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
cwl-ngs-workflows-cbb
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
pm4ngs
Project Manager for NGS data analysis
HemTools
HemTools: a collection of NGS pipelines and bioinformatic analyses
iskylims
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
TOGGLE
Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
BioInstaller
A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
ELeFHAnt
Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell data...