cell-biology topic
kaggle_image-segm
Simple tooling for instance segmentation aiming at cell biology...
countception
Count-Ception: Counting by Fully Convolutional Redundant Counting
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
deepcell-tf
Deep Learning Library for Single Cell Analysis
Usiigaci
Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
DeepLIIF
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
ImPartial
Interactive deep learning whole-cell segmentation and thresholding using partial annotations
actk
Automated Cell Toolkit
pytorch_integrated_cell
Integrated Cell project implemented in pytorch
DeepCycle
Cell cycle inference in single-cell RNA-seq