salmon topic

List salmon repositories

salmon

739
Stars
160
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🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

SalmonTE

79
Stars
23
Forks
Watchers

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

ikra

27
Stars
19
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RNAseq pipeline centered on Salmon

ostatus2

32
Stars
9
Forks
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A Ruby toolset for interacting with the OStatus suite of protocols

pisces

28
Stars
3
Forks
Watchers

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

fishpond

24
Stars
9
Forks
Watchers

Differential expression and allelic analysis, nonparametric statistics