biobakery topic

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

biobakery

bioBakery tools for meta'omic profiling

biobakery

MaAsLin2: Microbiome Multivariate Association with Linear Models

biobakery

Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

biobakery

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

biobakery

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

biobakery

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

biobakery

High-quality circular representations of taxonomic and phylogenetic trees

biobakery

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

biobakery

ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the pres...

biobakery