kegg topic

List kegg repositories

clusterProfiler

951
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247
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:bar_chart: A universal enrichment tool for interpreting omics data

bioservices

274
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61
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Access to Biological Web Services from Python.

geneSCF_inactive

20
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8
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GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF

mzkit

46
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14
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Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.

KEGG-Crawler

19
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4
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A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.

ggkegg

199
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16
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Analyzing and visualizing KEGG information using the grammar of graphics

ClusterProfShinyGSEA

17
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8
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A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries

MetQy

18
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9
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Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)