gfa topic

List gfa repositories

GFA-spec

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Graphical Fragment Assembly (GFA) Format Specification

gfapy

64
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Gfapy: a flexible and extensible software library for handling sequence graphs in Python

reveal

44
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Graph based multi genome aligner

gfakluge

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A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

VGpop

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Population genetics analysis on VG

panacus

84
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Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

zplgfa

63
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17
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#Golang package and cli tool for converting to #ZPL (from PNG, JPEG and GIF) for @ZebraTechnology-printers

svaha2

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Linear-time, low-memory construction of variation graphs

rs-gfatovcf

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Rust implementation of Flavia95's GFAtoVCF

GFAffix

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GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.