10xgenomics topic

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptom...

rezakj

A single-cell RNAseq pipeline for 10X genomics data

nf-core

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

bcgsc

⛓ Correct misassemblies using linked AND long reads

bcgsc

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

nf-core

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

wtsi-hpag

Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

LieberInstitute

Code for the spatialLIBD R/Bioconductor package and shiny app

LieberInstitute

Convert Seurat objects to 10x Genomics Loupe files.

10XGenomics

:chains: Construct a Physical Map from Linked Reads

bcgsc