chip-seq topic

API for HOMER in R for Genomic Analysis using Tidy Conventions

robertamezquita

(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER

biocore-ntnu

A python package and a set of shell commands to handle GTF files

dputhier

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

nf-core

Using combined evidence from replicates to evaluate ChIP-seq peaks

Genometric

Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks

MiraldiLab

Pipelines for NGS data preprocessing by the Bock lab and friends

epigen

An automated ChIP-seq pipeline using Nextfow

guigolab

Extract Sequence from Genome According to Annotation File

junjunlab

A robust model for quantitative comparison of ChIP-Seq data sets.

shao-lab