bioinformatics-pipeline topic
scipipe
Robust, flexible and resource-efficient pipelines using Go and the commandline
reflow
A language and runtime for distributed, incremental data processing in the cloud
SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
Roary
Rapid large-scale prokaryote pan genome analysis
snp-sites
Finds SNP sites from a multi-FASTA alignment file
Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
circlator
A tool to circularize genome assemblies
ariba
Antimicrobial Resistance Identification By Assembly
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
ngless
NGLess: NGS with less work