hh-suite
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soedinglab
Remote protein homology detection suite.
I installed hh-suite with conda and followed the instructions on your github pages. I have troubles to start hhpred as it is constantly searching for the pdb.hhm (in different variations/endings)...
:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki). ## Expected Behavior hhmakemodel.py is giving the not giving correct alignment file. "Error while using alignment file generated by hhmakemodel.py" return f(self.modpt,...
## Expected Behavior Hi, BFD database is so huge that I am looking for a solution to compress it. Could you provide the compressed version of BFD database, that is,...
Hello, I am trying to follow the mentioned steps in the wiki page to construct a custom PDB database. However, I have some questions about some steps. Please excuse me...
## Expected Behavior `hhconsensus` seems to be the recommended first step in converting MSA in `fasta` to `a3m` that allows to skip `reformat.pl` and thus would be expected to generate...
:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki). ## Expected Behavior #=GC line is recommended at bottom of alignment (https://en.wikipedia.org/wiki/Stockholm_format##=GC) Does not seem like big deal, but causes alphafold2 to...
Is there a recommended method for extracting the full sequences (i.e. not just the aligned part) of hits from an hhr file output by HHblits, or even from individual sequence...
## Expected Behavior Build a database with hhsuitedb.py ## Current Behavior cs219.ffdata and cs219.ffindex files are generated as empty files ## Steps to Reproduce Command ran: hhsuitedb.py --ia3m=genes_clust_95_PCs/*a3m --ihhm=genes_clust_95_PCs/*.hmm -o...
:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki). ## Expected Behavior Hit list (blast format) should contain information for all sequences present in the MSA ## Current Behavior Hit list...
FFindex is a trademark of the Ludwig-Maximilians-Universität München. Please update your documentation accordingly. Herzliche Grüße Andreas Hauser
