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alignment file error

Open sanaamir119 opened this issue 2 years ago • 1 comments

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Expected Behavior

hhmakemodel.py is giving the not giving correct alignment file.

"Error while using alignment file generated by hhmakemodel.py" return f(self.modpt, io.modpt, self.env.libs.modpt, eqvdst) _modeller.ModellerError: rdmmcif_303E> No atoms were read from the specified input MMCIF file, since the starting residue number and/or chain id in MODEL_SEGMENT (or the alignment file header) was not found; requested starting position: residue number " 1", chain " A"; atom file name: 2G0D.cif

Steps to Reproduce (for bugs)

while I used TvLDH fasta given the correct alignment , and modeller was able to model the structure

HH-suite Output (for bugs)

Please make sure to post the complete output of the tool you called. Please use gist.github.com.

Context

\While I have taken other sequence the alignment file is incorrect.

Your Environment

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sanaamir119 avatar Nov 25 '21 13:11 sanaamir119

I am running the hhpred standalone and trying to model the protein using ,modeller. But I think there is issue in generating alignment file

sanaamir119 avatar Nov 25 '21 14:11 sanaamir119