hh-suite
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soedinglab
Remote protein homology detection suite.
I am running the script `scripts/hh_reader.py` individually to parse `hhr` files as downloaded after running a HHPRED server query. The printing fails with a `TypeError` ## Expected Behavior Prints the...
:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki). ## Expected Behavior break in sequence where it occurs in PDB file (i.e. between Arg221 & Gln 251 in my test file)...
:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki). ## Expected Behavior It is said that hhsuitedb can build a HMM DB from only HMMs (see the 'or') Builds HHsuite database...
:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki). ## Expected Behavior ## Current Behavior ## Steps to Reproduce (for bugs) Please make sure to execute the reproduction steps. ## HH-suite...
:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki). ## Expected Behavior consensus sequence should look like this : LHCCGVTNYrDWxDTNYYSEKGFPKSCCKLEdxxCxPQRDxxxxxxxADKVNNE ## Current Behavior consensus sequence made by hhmake look like this...
I profiled the T1050 with the parameters run by AlphaFold. (Only -cpu is changed). I used Score-P as the profiling tool and got the following results. From this image, we...
detail: - 09:33:12.288 ERROR: In /opt/conda/conda-bld/hhsuite_1616660820288/work/src/hhalignment.cpp:223: Read: - 09:33:12.288 ERROR: sequence ss_pred contains no residues. platform: ubuntu 18.2
## Expected Behavior I am expecting hhblits to produce the same alignments when executed on the same input multiple times ## Current Behavior When default settings are used, alignments are...
Hi All, I'm using HHblits in the context of Porter5 to help predict secondary structure. Porter executes HHblits with the flags -cpu 2 -n 3 -maxfilt 150000 -maxmem 8 -v...
I've tried using the standard alphafold2 setup via docker (converted to a singularity container) via the setup described at https://github.com/kalininalab/alphafold_non_docker, and both result in the following error: ``` [...] E1210...
