hh-suite
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soedinglab
Remote protein homology detection suite.
## Expected Behavior tests pass ## Current Behavior ``` - 14:56:11.112 INFO: Search results will be written to query.hhr - 14:56:11.167 INFO: query.a3m is in A2M, A3M or FASTA format...
We need to remove all these `char line[LINELEN]` stack allocations.
For the Debian package of hhsuite we used the Debian package of ffindex version 0.9.9.9, but this leads to a build error: ``` [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd...
:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki). ## Expected Behavior I am trying to run HHblits using Uniclust90 as the sequence database. ## Current Behavior I am getting some...
To whom it may concern, I tried to use HHblits with the following command: /home/sj52/dependency/hh-suite/build/bin/hhblits -i query_1.fasta -o query.hhr -oa3m query.a3m -Z 50 -B 50 -d /home/sj52/dependency/database/pdb70 The input sequence...
I installed hh-suite in linux x86_64 and have been successfully using the HHblits function. I use uniclust30_2018_08 to generate the multiple sequence alignment file .a3m. Then use .a3m file to...
How can I build my own database for HHblits? First, how can I installed self-compiled HH-suite3 version includes MPI support? If this failed, could I just use "cstranslate -i %s...
Sorry for posting here if this is the wrong online location to ask this question but I thought other users might find it useful to see this post- (http://wwwuser.gwdg.de/~compbiol/data/hhsuite/databases/hhsuite_dbs) Your...
Hi, I'm getting this error to any alignment I try to add 2nd structure. ``` (base) acpguedes@haldane:~/projects/sig_trans/work/SBP_5/20190730/test2/hhsuite_teste_SBP$ addss.pl aln_base/WP_009507761.1..90-379.aln t.exp -fas $ /home/linuxbrew/anaconda3/scripts/reformat.pl -v 1 -M first fas a3m aln_base/WP_009507761.1..90-379.aln...
Hi, First, thanks a lot for providing this great tool. May I ask something about hhfilter ? I'm confused about some input arguments while I havent found a very detailed...
