hh-suite
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soedinglab
Remote protein homology detection suite.
Hello, I am trying to get hhblits results in a data table format. I have seen a recommendation to use the -blasttab option. (see the closed issue: Script to parse...
## Expected Behavior Values for "No_of_seqs" & "Neff" in stdout and in result file (.hhr) should be identical. Values for "No_of_seqs" & "Neff" should be correct. ## Current Behavior "No_of_seqs"...
Hi. I made my personal small database of interest using "Building customized databases" tutorial. It was not obvious because of "cstranslate -b" that was poorly documented. I want to query...
hello while testing hhsuite/3.2.0 I have the following error with addss.pl ``` bigmess:hhsuite/3.2.0 > addss.pl out.a3m $ cp out.a3m /tmp/dHAvg131b1/A2cQmTLZdi.in.a3m Filtering alignment to diversity 7 ... $ hhfilter -v 1...
I want to use hhblits to make a multiple sequence alignment using only eukaryote sequences. Is there a way to get only the eukaryote sequences from the uniclust database. :exclamation:...
## Expected Behavior hhblits returning the same .hhr outputs after every run ## Current Behavior After every run of hhblits (with fixed parameters) on a set of 500 proteins I...
## Expected Behavior Makes database with user supplied .a3m file(s) ## Current Behavior Erorr of: UnicodeDecodeError: 'utf-8' codec can't decode byte 0xff in position 36: invalid start byte ## Steps...
Hi, I tried to run hhblits but it gives errors as: Could not read index file... The command I run is: `hhblits -i input.fa -d /home/yanhuang/Desktop/hhsuite/database/uniclust30_2018_08_hhsuite/uniclust30_2018_08 -o output.hhr -norealign -n...
I ran the following code: First I ran the command to to build ffindex for my sequences kept in fasta file named as pgpb and then i ran command to...
When trying to build an HHBlits database from linclust output of 250mio clusters over 0.5bn sequences, `cstranslate_mpi` runs for a few days and does not produce an output ## Your...
