hh-suite
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soedinglab
Remote protein homology detection suite.
## Expected Behavior running a hhblits search should complete when searching with a sequence on a custom database ## Current Behavior hhblits returns a segmentation fault ## Steps to Reproduce...
:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki). ## Expected Behavior I want to implement AVX512 base on this version. ## Current Behavior In source file "hhviterbialgorithm.cpp", ``` ifdef AVX2...
## Expected Behavior templates_101/ffdata and ffindex present ## Current Behavior templates_101/ffdata is empty while ffindex is missing ## Steps to Reproduce (for bugs) I tried both colabfold_batch and colabfold with...
After conda install hhsuite=3.3.0, i try to run the hhblits command: hhblits -i query.seq -o query.hhr -d ./uniclust30 ,but got these errors: - ERROR: In /opt/conda/conda-bld/hhsuite_1594935877759/work/src/ffindexdatabase.cpp:11: FFindexDatabase: - ERROR: could...
:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki). I am trying to run alphafold (using the docker image in the current readme), but an error is encountered when running the...
Hi I'm a contributor over at deepchem. We rely on hhsuite for some of our packages, but it seems like hhsuite is not compatible with py3.10. Raising the issue for...
I'm running hhblits for over 7000 sequences on Uniref DB. When using hhblist_omp using 128 threads the process gets killed after reaching ~600 sequences after it consumes the whole RAM...
In `hh_reader.py`, `template_length` was incorrectly parsed: the value of `template_length` was actually `template_end`, due to the incorrect token index. This PR fixed this typo.
I build the databse from MSAs, first I place all of them in a single folder that does not contain any other files to create a single FFindex database and...
Anyone tried building their own databases for hhblits ? I mean that from a protein fasta file to hhblits database. I am using the pipeline listed in wiki of hhsuite:...
