Sam Morabito
Sam Morabito
Hi, Not sure what this "KeyMIxin" assay is, I haven't seen this before. It looks like this is an error thrown by Seurat rather than hdWGCNA itself, unfortunately we run...
Hi, can you please try this again with the latest version of hdWGCNA?
Hi, thanks for your interest in hdWGCNA. > When I perform consensus analysis, I cannot generate the downstream plots for each region. It sounds like you wanted to perform network...
> Yes, I would like to do the mentioned plot for each region. but at the same time I would like to be able to compare the modules between regions....
> I would like to know if I do the same steps (performing a network analysis on one cell type but module eigengenes in all the cell types) for different...
> If it seems okay to you, why do I need to do the below code if it doe snot use HVGs as you mentioned https://github.com/smorabit/hdWGCNA/issues/269? I think I need...
> I asked if it uses HVGs, and it is important to me if it does so. HVGs are not used for module eigengenes. > And when I asked should...
Hi, thanks for your interest in hdWGCNA. I am just wondering, what is the code that you are running which causes this error message?
Hi, I was able to reproduce the error, I think that I have identified and resolved the issue in the latest version of hdWGCNA. Can you please re-install hdWGCNA and...
Hi Paria, If I understand correctly, you have 2 conditions (disease and control) and you have 4 brain regions. One DME analysis you want to do is disease vs control...