Sam Morabito

Hi, I updated `ConstructNetwork` to create the temp files in the `tom_outdir` and to append `tom_name` to the file names. So if you are running `ConstructNetwork` on a cluster you...

Interesting, I did not make any changes to that function so I am not sure why the behavior is changing all of the sudden. I will look into it and...

Just tried it on my end, and the behavior has not changed for me... To clarify if we run `ConstructNetwork` like this: ``` seurat_obj

Finally have updated this function to be able to specify the number of genes in the inner circle and in the outer circle. Please refer to the [network visualization tutorial](https://smorabit.github.io/hdWGCNA/articles/network_visualizations.html#individual-module-network-plots)....

Closing due to inactivity but please re-open if there is new information about this issue.

Hi, Currently it is not possible to repel labels with ModuleUMAPPlot. Adding this functionality will basically require me to re-write the function using a different plotting engine like ggraph or...

I finally have an update for this issue! In the latest version of hdWGCNA, we introduced a new part of the network visualization tutorial covering [customized network plots](https://smorabit.github.io/hdWGCNA/articles/network_visualizations.html#customized-network-plots). For now...

Hi, If you can paste your code here then I may be able to provide some advice for what you could change.

Hi, I am happy to try to help you use your own network with hdWGCNA. First, could you please provide all the relevant about your network and dataset, that would...

It's not clear what you mean when you say > I wonder if I can directly use the network G to perform hdWGCNA analysis Can you clarify which analysis you...