Sam Morabito comments

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                                            Sam Morabito

Removing anti-correlated genes from module

> "Can I trim my modules to specific genes of interest?" Ultimately you can do whatever you want because it is your data, but personally I would not do this...

ModuleTraitCorrelation：Error in `stop_vctrs()`: ! Input must be a vector, not an environment.

Hi, Unfortunately I am unable to reproduce this error. Can you provide a reproducible example with the tutorial dataset?

ModuleTraitCorrelation：Error in `stop_vctrs()`: ! Input must be a vector, not an environment.

Hi, did you mean to close this issue?

The parameter networkType of TestSoftPowers is invalid

Unfortunately I am not able to reproduce your error message. If you can provide me with some more relevant information I might be able to help.

Conda Skeleton for Workflow Integration

Hi, We currently do not have plans to upload hdWGCNA to conda. We will likely submit hdWGCNA to CRAN later this year, and maybe we can think about conda after...

Error with MetaspotsByGroups and ConstructMetaspots

Hello, Are you able to reproduce this error on the tutorial dataset? I tried and I am not able to. It is very difficult for me to help resolve issues...

pbmc <- ModuleEigengenes( pbmc, group.by.vars = "orig.ident" ) pbmc@misc$PBMC$MEs %>% head NULL

Hi, Are you able to reproduce this behavior on the tutorial dataset? I have not encountered NaN values in the modules table before.

pbmc <- ModuleEigengenes( pbmc, group.by.vars = "orig.ident" ) pbmc@misc$PBMC$MEs %>% head NULL

Closing this issue due to inactivity.

Error: colours encodes as numbers must be positive

Can you please provide the code that you ran?

performing hdWGCNA analysis for seurat Assay5 object

Hi, Thank you for writing this issue. Unfortunately I have not come across this error and I am currently unable to reproduce it even with the Assay5 object. I am...