Sam Morabito

Error running detect_transition_genes()

1

I am using the STREAM python package, and I am having trouble running the detect_transition_genes() function on my data. I can process everything just fine up to the streamplots and...

Which GWAS SNPs should I use?

1

I ran through the [vignette](https://caleblareau.github.io/gchromVAR/articles/gchromVAR_vignette.html) using my scATAC-seq data for the peaks, and I downloaded a fine-mapped posterior-probabilities for a few traits of interest from [CausalDB](http://mulinlab.org/causaldb/index.html). However I found that...

Hi, first of all thank you for developing this wonderful software package! I am using a trying to use Swan on a 2019 MacBook Pro (Catalina), and I came across...

model.fit hangs indefinitely

12

HI, I was able to run [this tutorial](https://github.com/dpeerlab/SEACells/blob/main/notebooks/SEACell_computation.ipynb) on the provided sample data. However, I am running into problems when using my own dataset (~58k cells and ~30k genes). Here...