Sam Morabito comments

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                                            Sam Morabito

Does it make sense to compare two levels of a variable (with 4 level) in one level of another variable(with two levels) using DME

> I just wanted to confirm if it makes sense to compare different levels of the region variable within one level of the group_id variable. Makes sense to me! I...

Question about the possibility of using external metacell asssignment

Hi, thanks for your question. [Please see this vignette](https://smorabit.github.io/hdWGCNA/articles/other_metacells.html) regarding the use of alternative metacell approaches. Note that we did not benchmark which metacell approach is "best" for hdWGCNA, so...

Not getting any Kme (NaN) values after "ModuleConnectivity"

Hi, thank you for taking the time to write this issue. > Have not tried to reproduce the error on a tutorial dataset. I have never personally run into this...

Not getting any Kme (NaN) values after "ModuleConnectivity"

@apal6 @Paoloorder66 Are either of you able to reproduce this error with the tutorial data, or does this only appear on your own dataset?

Not getting any Kme (NaN) values after "ModuleConnectivity"

If you are able to run it on the tutorial data without this issue, it seems that the issue likely is due to something about your particular dataset. Unfortunately I...

Not getting any Kme (NaN) values after "ModuleConnectivity"

Closing due to inactivity.

Not getting any Kme (NaN) values after "ModuleConnectivity"

Are you able to provide a reproducible example that I can run? I have not found this error myself so it is difficult for me to help at this time.

Question about visualizing topologies after projection in module preservation analysis

Hi, Thank you all for writing about this issue. I understand that there is some confusion about visualizing the topologies of different networks, and how it relates to module preservation...