Co-expression module dynamics with pseudotime cannot run the module dynamics graphs

[CamiCalamity]

Hi, Thanks a lot for your package and the clear explanation that you give with your work. I am trying to reproduce what you did with the co-expression module dynamics with pseudotime (https://smorabit.github.io/hdWGCNA/articles/pseudotime.html). I do manage to calculate both the modules and the pseudotime but I don't manage to plot the module dynamics graph either with the dataset that you provided in the tutorial or my data.

I recover the error code :

Error in group_by(): ! Can't transform a data frame with duplicate names. Run rlang::last_trace() to see where the error occurred.

Thanks a lot for you help!

[smorabit]

Hi, thanks for your interest in hdWGCNA.

I am just wondering, what is the code that you are running which causes this error message?

[billqiao1991]

When I ran PlotModuleTrajectory, I met the same issue

[gaohaohoa]

I also encountered the same problem, as follows: When executing the PlotModuleTrajectory() function, an error message shows that all module ME values have been incorrectly repeated twice. But in fact, when usingcolnames( [email protected] )to check, there was no repetition. I have added pictures below to better describe the problem: The red box shows that the module name does appear twice in the column name, but it does not exist in the metadata

ps: Forgive me for covering up some data information and only retaining the column names Best wishes and looking forward to the developer's response!

[smorabit]

Hi, I was able to reproduce the error, I think that I have identified and resolved the issue in the latest version of hdWGCNA. Can you please re-install hdWGCNA and try to run this code again? Please let me know if it works for you.